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Intron Name: Anas_platyrhynchos_platyrhynchos_4_45208486_45209062_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45208486 - 45209062

Intron Length:

577

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

GTTCTTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AGTGTTTTAATT

Flanking Amino Acid:

TDSLTPEYLKSKNQLEFCCH

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

83.8

34.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

89.9

0.9

0.7

88.2

29.1

Minor 5ss

39.9

-1.1

2.9

56.1

41.4

Minor BPS

63.9

0.52

1.3

74.04

37.5

Associated Gene:

Gene:

CLOCK

Ensembl Gene ID:

ENSAPLG00000007176

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007535

45188113 - 45221371

33259