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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45212284_45216464_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45212284 - 45216464
Intron Length:
4181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ATTTGCTTGATT
Flanking Amino Acid:
KSIDFLRKHKEITAQSDASE
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
72.1
0.5
0.9
66.3
39.5
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
68.5
0.66
1.7
85.14
35.4

Associated Gene:

Gene:
CLOCK
Ensembl Gene ID:
ENSAPLG00000007176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007535
45188113 - 45221371
33259