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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45217078_45218703_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45217078 - 45218703
Intron Length:
1626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTTATCT
Flanking Amino Acid:
STHKMSSIADRNDGSIFDGL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
87.5
0.84
0.7
84.9
29.5
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
73.3
0.81
1.6
87.39
38.7

Associated Gene:

Gene:
CLOCK
Ensembl Gene ID:
ENSAPLG00000007176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007535
45188113 - 45221371
33259