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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45218795_45221257_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
45218795 - 45221257
Intron Length:
2463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCCTCTCTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.1
0.79
0.7
79.4
26.3
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
49.5
-0
2
63.56
42.8

Associated Gene:

Gene:
CLOCK
Ensembl Gene ID:
ENSAPLG00000007176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007535
45188113 - 45221371
33259