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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45249894_45250238_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45249894 - 45250238
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTGCTATTACA
Flanking Amino Acid:
ECGGIYLKVEELEWKLAEVG
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.4
0.75
0.8
77.2
35.8
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
51.7
0.05
2
72.06
39.9

Associated Gene:

Gene:
PDCL2
Ensembl Gene ID:
ENSAPLG00000007653
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007942
45249611 - 45256006
6396