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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45252202_45254078_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45252202 - 45254078
Intron Length:
1877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
GTTTTTTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTAATT
Flanking Amino Acid:
EADRKAVEMYRQQRLQEWKC
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74
0.54
1
75.4
38.6
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
PDCL2
Ensembl Gene ID:
ENSAPLG00000007653
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007942
45249611 - 45256006
6396