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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45254170_45255092_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45254170 - 45255092
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GTTTGCTTATTT
Flanking Amino Acid:
MVLRLQKEAEVKPYERMNLK
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
77.7
0.62
0.9
70
40.5
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
59.8
0.39
2
80.47
41.8

Associated Gene:

Gene:
PDCL2
Ensembl Gene ID:
ENSAPLG00000007653
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007942
45249611 - 45256006
6396