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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45257801_45258350_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
45257801 - 45258350
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89
0.88
0.7
84.2
30.3
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
NMU
Ensembl Gene ID:
ENSAPLG00000007751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008039
45257458 - 45273937
16480