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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45259070_45264032_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45259070 - 45264032
Intron Length:
4963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTATGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATTT
Flanking Amino Acid:
ERRLKRHKVDEDLQGAGGIQ
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
79.7
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
44.9
-0.6
2.6
58.7
39.4
Minor BPS
58.5
0.35
1.7
77.58
39.2

Associated Gene:

Gene:
NMU
Ensembl Gene ID:
ENSAPLG00000007751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008039
45257458 - 45273937
16480