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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45264108_45266142_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45264108 - 45266142
Intron Length:
2035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CGTGTCCTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTGCTCATGT
Flanking Amino Acid:
THDSGNSDIMSSVLHPLLQL
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
72.3
37.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.2
0.52
0.9
69.3
36.9
Minor 5ss
33.2
-1.9
3.2
40.6
40.8
Minor BPS
44.6
-0.3
2.4
68.81
47.6

Associated Gene:

Gene:
NMU
Ensembl Gene ID:
ENSAPLG00000007751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008039
45257458 - 45273937
16480