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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45266330_45267083_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45266330 - 45267083
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACAC
5'SS Class:
major
3'SS Sequence:
ATTATTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGATTATTATTC
Flanking Amino Acid:
LVMGFLQKPQGLDEKDNTKR
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
66
40.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.2
0.59
0.9
69.8
36
Minor 5ss
37.8
-1.4
3.1
50.8
45.8
Minor BPS
49
-0
1.8
60.82
38.4

Associated Gene:

Gene:
NMU
Ensembl Gene ID:
ENSAPLG00000007751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008039
45257458 - 45273937
16480