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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45271096_45273759_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45271096 - 45273759
Intron Length:
2664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAG
U12 Branch Point Sequence:
TATTGCTAAGCA
Flanking Amino Acid:
LLASSMCACKGAPMPSQALD
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
55.4
0.13
1.6
63.6
42.5
Major PPT
82.6
0.73
0.9
73.5
41.8
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
48.8
-0
2.3
68.39
43.9

Associated Gene:

Gene:
NMU
Ensembl Gene ID:
ENSAPLG00000007751
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008039
45257458 - 45273937
16480