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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45341692_45343656_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45341692 - 45343656
Intron Length:
1965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCGGG
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
CATATCTAAATT
Flanking Amino Acid:
GAGRCYLCAAVTKSKEVEIC
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.3
49.1
47.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
40.2
-1.1
3.5
56
48.2
Minor BPS
54.1
0.21
1.7
68.99
42.4

Associated Gene:

Gene:
EXOC1L
Ensembl Gene ID:
ENSAPLG00000022105
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026794
45341571 - 45345951
4381