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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45343788_45345687_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45343788 - 45345687
Intron Length:
1900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
CTCCATTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTCTCTCCATT
Flanking Amino Acid:
EMIDGKEADTDNPYFDMHFH
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
78.6
35.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.3
0.64
0.8
76.4
31.8
Minor 5ss
41.5
-0.9
3.5
68.1
42.7
Minor BPS
48.1
-0
1.9
68.82
42.7

Associated Gene:

Gene:
EXOC1L
Ensembl Gene ID:
ENSAPLG00000022105
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026794
45341571 - 45345951
4381