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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45353430_45354280_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45353430 - 45354280
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTATTTTGAAAT
Flanking Amino Acid:
KKRNCFLCATVTTERPVQVN
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
88.4
0.86
0.7
83
25.4
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
56
0.27
1.5
71.62
38.8

Associated Gene:

Gene:
EXOC1
Ensembl Gene ID:
ENSAPLG00000007799
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044612
45353296 - 45376790
23495
ENSAPLT00000008162
45353296 - 45376790
23495