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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45359521_45362117_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45359521 - 45362117
Intron Length:
2597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
ATTTCTTATCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTCTTATCA
Flanking Amino Acid:
YNKPYYLSVPGHDQSSTLAQ
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.8
34.6
Major BPS
100
1.24
0.5
100
0
Major PPT
70.2
0.46
1.1
69
40.8
Minor 5ss
32.8
-2
2.7
40.4
39.1
Minor BPS
72.1
0.69
1.5
80.21
35.5

Associated Gene:

Gene:
EXOC1
Ensembl Gene ID:
ENSAPLG00000007799
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044612
45353296 - 45376790
23495