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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45363744_45367984_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45363744 - 45367984
Intron Length:
4241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTATTTAACA
Flanking Amino Acid:
TGTTKEGKKFGLHGSSGKLT
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
74.9
36.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.9
0.69
0.9
77
35.7
Minor 5ss
48.6
-0.1
2.8
64.8
41.1
Minor BPS
73.2
0.72
1.4
80.03
36.1

Associated Gene:

Gene:
EXOC1
Ensembl Gene ID:
ENSAPLG00000007799
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044612
45353296 - 45376790
23495