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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45366783_45367984_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45366783 - 45367984
Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
CTTTATTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTATTTAACA
Flanking Amino Acid:
KESAVKQETESLHGSSGKLT
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
33.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.9
0.69
0.9
77
35.7
Minor 5ss
35.1
-1.7
2.8
38.8
40.3
Minor BPS
73.2
0.72
1.4
80.03
36.1

Associated Gene:

Gene:
EXOC1
Ensembl Gene ID:
ENSAPLG00000007799
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008162
45353296 - 45376790
23495