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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45378813_45379325_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45378813 - 45379325
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGGGCTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCAAGTAATA
Flanking Amino Acid:
KNLQAVVQTPGGRKRNIPFR
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
65.1
0.34
1.1
67.7
42.7
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
46.2
-0.2
2.3
67.2
39

Associated Gene:

Gene:
CEP135
Ensembl Gene ID:
ENSAPLG00000008577
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028675
45375936 - 45400642
24707
ENSAPLT00000027912
45375936 - 45404974
29039
ENSAPLT00000008946
45375936 - 45404974
29039