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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45379468_45381040_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45379468 - 45381040
Intron Length:
1573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTAA
5'SS Class:
major
3'SS Sequence:
TGCTACATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTATAT
U12 Branch Point Sequence:
TATTGCTACATT
Flanking Amino Acid:
IADLLQVADNRIHELQLEVT
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
67.6
35.8
Major BPS
55.3
0.13
1.2
52.8
42.9
Major PPT
74.7
0.56
0.9
70.4
39.7
Minor 5ss
38.2
-1.3
3
47.1
48.3
Minor BPS
46.8
-0.1
2.4
72.44
45

Associated Gene:

Gene:
CEP135
Ensembl Gene ID:
ENSAPLG00000008577
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028675
45375936 - 45400642
24707
ENSAPLT00000027912
45375936 - 45404974
29039
ENSAPLT00000008946
45375936 - 45404974
29039