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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45381126_45383201_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45381126 - 45383201
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
AAATATCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATGAAAA
Flanking Amino Acid:
ESGMKNYSKQVEYLQQTNKE
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
67.8
0.4
1
63.7
42.6
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
51
0.03
2
72.6
38.1

Associated Gene:

Gene:
CEP135
Ensembl Gene ID:
ENSAPLG00000008577
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027912
45375936 - 45404974
29039