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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45385148_45386100_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45385148 - 45386100
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
MEKNENFEIKERELVLEIER
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.6
0.8
0.8
80.7
31.4
Minor 5ss
33.8
-1.8
3.4
49.7
46.6
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
CEP135
Ensembl Gene ID:
ENSAPLG00000008577
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028675
45375936 - 45400642
24707
ENSAPLT00000027912
45375936 - 45404974
29039
ENSAPLT00000008946
45375936 - 45404974
29039