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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45386295_45386781_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45386295 - 45386781
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
AATCACTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TATATTTGAACC
Flanking Amino Acid:
PSPSRRTPEKSEDLRLVTRE
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
74.1
0.54
0.9
66.3
39.4
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
60.2
0.3
1.4
68.92
36

Associated Gene:

Gene:
CEP135
Ensembl Gene ID:
ENSAPLG00000008577
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028675
45375936 - 45400642
24707
ENSAPLT00000027912
45375936 - 45404974
29039
ENSAPLT00000008946
45375936 - 45404974
29039