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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45388678_45390346_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45388678 - 45390346
Intron Length:
1669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
ACTGGTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
CTTCTTTCAACT
Flanking Amino Acid:
SQFKAELCSLQLLNEQLQRS
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
75.4
0.57
1
65.4
45
Minor 5ss
40
-1.1
3
55.9
42.3
Minor BPS
60.9
0.42
1.5
76.97
39.8

Associated Gene:

Gene:
CEP135
Ensembl Gene ID:
ENSAPLG00000008577
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008946
45375936 - 45404974
29039
ENSAPLT00000028675
45375936 - 45400642
24707
ENSAPLT00000027912
45375936 - 45404974
29039