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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45390463_45390532_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45390463 - 45390532
Intron Length:
70

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGATCACT
5'SS Class:
major
3'SS Sequence:
GCTTTATTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTAAAAT
Flanking Amino Acid:
EEIIKLEEEIDRLNQKSTSH
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
73.3
37.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.8
0.65
0.8
73
36.4
Minor 5ss
36.6
-1.5
2.9
50
45.9
Minor BPS
59.2
0.37
1.7
77.65
38.8

Associated Gene:

Gene:
CEP135
Ensembl Gene ID:
ENSAPLG00000008577
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027912
45375936 - 45404974
29039
ENSAPLT00000008946
45375936 - 45404974
29039
ENSAPLT00000028675
45375936 - 45400642
24707