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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45390688_45391150_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45390688 - 45391150
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
ACLDDNIANKEKTITHLRLT
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
80
0.75
1
78.6
31
Major PPT
88.4
0.86
0.7
85
29.6
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
CEP135
Ensembl Gene ID:
ENSAPLG00000008577
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028675
45375936 - 45400642
24707
ENSAPLT00000027912
45375936 - 45404974
29039
ENSAPLT00000008946
45375936 - 45404974
29039