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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45400003_45400479_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45400003 - 45400479
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TCCATCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TCTGATATAACT
Flanking Amino Acid:
KDKLTLAEGKLAITKILSFE
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
68.7
42
Major BPS
69.1
0.48
1
70
32.1
Major PPT
82.8
0.74
0.8
80.1
31.7
Minor 5ss
39.8
-1.1
3.1
61.7
42.2
Minor BPS
51.2
0.12
1.9
73.43
43.5

Associated Gene:

Gene:
CEP135
Ensembl Gene ID:
ENSAPLG00000008577
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028675
45375936 - 45400642
24707