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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45400003_45402644_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45400003 - 45402644
Intron Length:
2642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TGATTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATGATTT
Flanking Amino Acid:
KDKLTLAEGKLSSHNREVSL
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
68.7
42
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.4
0.73
0.8
81.4
36.1
Minor 5ss
39.8
-1.1
3.1
61.7
42.2
Minor BPS
49.8
0.07
2
73.98
43

Associated Gene:

Gene:
CEP135
Ensembl Gene ID:
ENSAPLG00000008577
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027912
45375936 - 45404974
29039
ENSAPLT00000008946
45375936 - 45404974
29039