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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4542613_4543131_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4542613 - 4543131
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTACTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAAAAT
U12 Branch Point Sequence:
GTTTGCTTACTC
Flanking Amino Acid:
RPQSKLSHIKGHEGDPCLRS
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
52.8
0.07
1.3
61.7
41.5
Major PPT
82.6
0.73
0.7
81.5
30.2
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
56.3
0.18
2
70.68
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006363
4542362 - 4619845
77484