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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45506493_45515321_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45506493 - 45515321
Intron Length:
8829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAC
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
NVLGKVKTLQQQLAKNIKFG
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
49.9
-0
1.1
47.4
35.7
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
CRACD
Ensembl Gene ID:
ENSAPLG00000017006
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048333
45506304 - 45529906
23603