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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45515487_45517662_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45515487 - 45517662
Intron Length:
2176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTTTTATAATC
Flanking Amino Acid:
DTVLSESGNKSTEAPDLLRK
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
78.2
36.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.9
0.76
0.8
76.9
37.3
Minor 5ss
43.7
-0.7
2.9
59.5
38.8
Minor BPS
61.1
0.33
1.5
71.34
33.8

Associated Gene:

Gene:
CRACD
Ensembl Gene ID:
ENSAPLG00000017006
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048333
45506304 - 45529906
23603