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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45519225_45521137_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45519225 - 45521137
Intron Length:
1913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGAAC
5'SS Class:
major
3'SS Sequence:
TCTCCCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TATCAAGTAACT
Flanking Amino Acid:
MSRKHKRLTKGSQSLTITEF
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
67.6
37.3
Major BPS
70.2
0.5
1
72.1
33
Major PPT
80.9
0.7
0.8
77.7
29.4
Minor 5ss
38.7
-1.3
3.1
51.2
45.6
Minor BPS
46.8
-0.1
2.3
73.45
42.4

Associated Gene:

Gene:
CRACD
Ensembl Gene ID:
ENSAPLG00000017006
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048333
45506304 - 45529906
23603