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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45524247_45525935_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45524247 - 45525935
Intron Length:
1689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CATTACTCAACC
Flanking Amino Acid:
NDKKPEPLKKEKPVLQSRHS
Intron Amino Acid Position:
1239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
59.5
0.28
1.8
69.23
41.7

Associated Gene:

Gene:
CRACD
Ensembl Gene ID:
ENSAPLG00000017006
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048333
45506304 - 45529906
23603