About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45526127_45527124_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45526127 - 45527124
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AATTTACCAATT
Flanking Amino Acid:
KQAEKLAKENAAVSNQSDNK
Intron Amino Acid Position:
1303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
80
34.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
79.9
0.67
0.8
73
37.4
Minor 5ss
43.5
-0.7
3
62.3
42.4
Minor BPS
45.1
-0.2
2
65.86
38.4

Associated Gene:

Gene:
CRACD
Ensembl Gene ID:
ENSAPLG00000017006
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048333
45506304 - 45529906
23603