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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45548661_45549128_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45548661 - 45549128
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTACTTTACA
Flanking Amino Acid:
YILVENDKVKKFQMSHAGWF
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89.9
0.9
0.7
84.3
30.3
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
71
0.65
1.8
84.87
34.2

Associated Gene:

Gene:
AASDH
Ensembl Gene ID:
ENSAPLG00000008927
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041163
45534270 - 45551445
17176
ENSAPLT00000009292
45533310 - 45551445
18136