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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45549250_45551191_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45549250 - 45551191
Intron Length:
1942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACGGTT
5'SS Class:
major
3'SS Sequence:
TTTGTCTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
PGINLPSWILGILQVPAAYS
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
67.8
43.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.7
0.6
0.9
77.7
36.7
Minor 5ss
40.3
-1.1
3.7
55.6
48.7
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
AASDH
Ensembl Gene ID:
ENSAPLG00000008927
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041163
45534270 - 45551445
17176
ENSAPLT00000009292
45533310 - 45551445
18136