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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45556449_45557861_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45556449 - 45557861
Intron Length:
1413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AATTCTTTATTT
Flanking Amino Acid:
PEFHDLANYIGADSVVYLSV
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
81.9
32.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.5
0.71
0.8
74.7
36
Minor 5ss
42
-0.9
3.5
64.1
47.4
Minor BPS
66.7
0.6
1.5
79.34
37

Associated Gene:

Gene:
PPAT
Ensembl Gene ID:
ENSAPLG00000009106
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009514
45554727 - 45601367
46641