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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45557983_45558421_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45557983 - 45558421
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTGAAACT
Flanking Amino Acid:
KLLRESGAKEVHIRVASPPI
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.4
0.82
0.8
85.6
33.6
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
49
0
2.3
74.22
43.6

Associated Gene:

Gene:
PPAT
Ensembl Gene ID:
ENSAPLG00000009106
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009514
45554727 - 45601367
46641