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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45561463_45562567_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45561463 - 45562567
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TTCTCTTTCAAG
Flanking Amino Acid:
ESCSFLSIGAEYYREVLPGE
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
80.3
0.68
1
79.3
33
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
54
-0
2
63.96
44.2

Associated Gene:

Gene:
PPAT
Ensembl Gene ID:
ENSAPLG00000009106
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009514
45554727 - 45601367
46641