About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45562641_45563856_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45562641 - 45563856
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAT
5'SS Class:
major
3'SS Sequence:
TCTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATACCTGAAAT
Flanking Amino Acid:
LIPVGDMNGKGKDNSETEGW
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
71.2
40.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90.4
0.91
0.7
89.1
26
Minor 5ss
38.9
-1.2
3.3
55.8
48.4
Minor BPS
65
0.55
1.6
81.07
39.4

Associated Gene:

Gene:
PPAT
Ensembl Gene ID:
ENSAPLG00000009106
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009514
45554727 - 45601367
46641