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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45564207_45565581_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45564207 - 45565581
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TGTGTCTTAAAA
Flanking Amino Acid:
LTNAVRLRRKLMRHGVGLST
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.2
85.3
32.2
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
63.3
0.3
1.2
64.4
40.7
Minor 5ss
35.7
-1.6
2.7
45.8
42.3
Minor BPS
65.7
0.49
1.5
72.99
38.7

Associated Gene:

Gene:
PPAT
Ensembl Gene ID:
ENSAPLG00000009106
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009514
45554727 - 45601367
46641