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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45565789_45569238_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45565789 - 45569238
Intron Length:
3450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TTTCTCCCAAAG
Flanking Amino Acid:
ESSQAFKVHKGMGLINHVFN
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
74
0.54
1
75.4
27.3
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
46.4
-0.4
2
59.32
41.8

Associated Gene:

Gene:
PPAT
Ensembl Gene ID:
ENSAPLG00000009106
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009514
45554727 - 45601367
46641