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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45569306_45601239_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45569306 - 45601239
Intron Length:
31934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATGTTTAATT
Flanking Amino Acid:
ITLGLVGLQHRGQESAGIVT
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79
0.65
0.9
73
36.8
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
62.7
0.48
1.8
75.99
41.5

Associated Gene:

Gene:
PPAT
Ensembl Gene ID:
ENSAPLG00000009106
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009514
45554727 - 45601367
46641