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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45576232_45579334_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45576232 - 45579334
Intron Length:
3103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAGTAT
5'SS Class:
major
3'SS Sequence:
CTACCTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
CTTTCCCCACCC
Flanking Amino Acid:
FMSRVRPVQLGNPCLSLSPT
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.7
35.5
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
68.8
0.42
1
62.8
37.1
Minor 5ss
43.8
-0.7
3.3
63.6
48.1
Minor BPS
48.3
-0.1
2.2
67.47
44.1

Associated Gene:

Gene:
PAICS
Ensembl Gene ID:
ENSAPLG00000009439
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022530
45570574 - 45609236
38663