About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45579815_45580679_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45579815 - 45580679
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATAGCATTATTT
Flanking Amino Acid:
TEAKSEKDCIEMPGDTGEED
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.3
0.66
1
74.3
39.8
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
48.9
-0
1.9
68.41
42.5

Associated Gene:

Gene:
PAICS
Ensembl Gene ID:
ENSAPLG00000009439
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009901
45570984 - 45626029
55046
ENSAPLT00000025625
45570984 - 45609236
38253
ENSAPLT00000025618
45570984 - 45612102
41119
ENSAPLT00000022530
45570574 - 45609236
38663