Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45589876_45591215_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45589876 - 45591215

Intron Length:

1340

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTAAAA

5'SS Class:

major

3'SS Sequence:

TCTCTCTTTTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAC

U12 Branch Point Sequence:

TACTTAGTAACC

Flanking Amino Acid:

WRYESSSLLSVSVGDVTANT

Intron Amino Acid Position:

521

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

69.9

35.9

Major BPS

66.7

0.42

1.2

67.6

36.5

Major PPT

78.3

0.64

82.7

26.3

Minor 5ss

31.8

-2.1

3.1

40.4

45.3

Minor BPS

48.3

-0.1

2.2

64.04

41.5

Associated Gene:

Gene:

PAICS

Ensembl Gene ID:

ENSAPLG00000009439

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022530

45570574 - 45609236

38663

ENSAPLT00000009901

45570984 - 45626029

55046

ENSAPLT00000028579

45570984 - 45612102

41119

ENSAPLT00000025618

45570984 - 45612102

41119