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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45591282_45592466_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45591282 - 45592466
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
TACACTCTAAGT
Flanking Amino Acid:
LGIKRKTWNDEMSPVPLKKS
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.7
34.5
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
77.7
0.62
0.9
71.5
38.4
Minor 5ss
31.8
-2.1
3.3
40.1
39.9
Minor BPS
47.9
-0
2
66.34
44.2

Associated Gene:

Gene:
PAICS
Ensembl Gene ID:
ENSAPLG00000009439
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022530
45570574 - 45609236
38663
ENSAPLT00000009901
45570984 - 45626029
55046
ENSAPLT00000028579
45570984 - 45612102
41119
ENSAPLT00000025618
45570984 - 45612102
41119