Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45605021_45605599_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45605021 - 45605599

Intron Length:

579

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCTTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

GTTTTCTTAATA

Flanking Amino Acid:

YPPKIEMFFKDDANNDPQWS

Intron Amino Acid Position:

750

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.7

1.12

0.6

91.3

19.2

Major BPS

78.2

0.7

77.9

32.1

Major PPT

77.3

0.62

0.9

74.1

35.4

Minor 5ss

44.8

-0.6

2.8

61.1

43.8

Minor BPS

81.7

0.99

83.67

30.1

Associated Gene:

Gene:

PAICS

Ensembl Gene ID:

ENSAPLG00000009439

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009901

45570984 - 45626029

55046

ENSAPLT00000028579

45570984 - 45612102

41119

ENSAPLT00000025625

45570984 - 45609236

38253

ENSAPLT00000025618

45570984 - 45612102

41119

ENSAPLT00000022530

45570574 - 45609236

38663