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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45605780_45605869_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45605780 - 45605869
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TAGTTCCTAAGA
Flanking Amino Acid:
PQNCTLVDLKIEFGVNILTK
Intron Amino Acid Position:
810

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.6
41.3
Major BPS
62
0.3
1
53
34.1
Major PPT
80
0.68
0.8
77.7
36.7
Minor 5ss
44.8
-0.6
2.6
56.4
48
Minor BPS
50.8
0.02
2
64.68
41.7

Associated Gene:

Gene:
PAICS
Ensembl Gene ID:
ENSAPLG00000009439
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025618
45570984 - 45612102
41119
ENSAPLT00000022530
45570574 - 45609236
38663
ENSAPLT00000009901
45570984 - 45626029
55046
ENSAPLT00000028579
45570984 - 45612102
41119
ENSAPLT00000025625
45570984 - 45609236
38253