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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45605984_45606765_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45605984 - 45606765
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATATTT
Flanking Amino Acid:
GDRSQQKDKQSYRDLKEVTP
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
100
1.24
0.5
100
0
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
56.5
0.28
1.8
78.83
37.6

Associated Gene:

Gene:
PAICS
Ensembl Gene ID:
ENSAPLG00000009439
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025625
45570984 - 45609236
38253
ENSAPLT00000025618
45570984 - 45612102
41119
ENSAPLT00000022530
45570574 - 45609236
38663
ENSAPLT00000009901
45570984 - 45626029
55046
ENSAPLT00000028579
45570984 - 45612102
41119